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Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

The Art of Zoo is a unique initiative that brings together art, wildlife, and conservation. Our mission is to inspire creativity, promote empathy, and support the well-being of animals through various forms of artistic expression.

How does this draft look to you? Are there any changes or additions you'd like to make?

The Art of Zoo is a platform where artists, wildlife enthusiasts, and conservationists come together to celebrate the beauty and diversity of the natural world. We believe that art has the power to inspire, educate, and spark meaningful conversations about the importance of conservation and animal welfare.

Program Components and Older Versions

Artofzoo Homepage — Legit

The Art of Zoo is a unique initiative that brings together art, wildlife, and conservation. Our mission is to inspire creativity, promote empathy, and support the well-being of animals through various forms of artistic expression.

How does this draft look to you? Are there any changes or additions you'd like to make? artofzoo homepage

The Art of Zoo is a platform where artists, wildlife enthusiasts, and conservationists come together to celebrate the beauty and diversity of the natural world. We believe that art has the power to inspire, educate, and spark meaningful conversations about the importance of conservation and animal welfare. The Art of Zoo is a unique initiative


Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)
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Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu